PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g079360.2.1

Common Name

SlWRKY37

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

WRKY

Protein Properties

Length: 241aa MW: 26883.8 Da PI: 4.7896

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g079360.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.9	5.7e-30	53	111	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC++kk+ver+++d ++++itY+++Hnh+ Solyc01g079360.2.1 53 SDCWSWRKYGQKPIKGSPYPRGYYRCSSSkGCSAKKQVERCSKDASLFIITYTSSHNHP 111 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-31	44	113	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-26	49	113	IPR003657	WRKY domain
SMART	SM00774	1.0E-34	52	112	IPR003657	WRKY domain
PROSITE profile	PS50811	30.423	53	113	IPR003657	WRKY domain
Pfam	PF03106	5.5E-25	54	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRSKPTKSQ SKTSRLLQPQ FLASKNRKMA QKVVMTVQME AKSLKQKNEG PPSDCWSWRK 60 YGQKPIKGSP YPRGYYRCSS SKGCSAKKQV ERCSKDASLF IITYTSSHNH PGPNLPKDSV 120 KQEPVVDQHV SLEDNNDEDD DDDDDNDTQS CKTPLNSTTT STSIPQGILE ENLFTDNFLG 180 TISYDDFLPL SYPQLMKFPK SELSEENDFY DELGELELPP SSSTSFAGIF EEAILVDPSS 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	9e-20	53	114	17	80	Disease resistance protein RRS1
5w3x_D	9e-20	53	114	17	80	Disease resistance protein RRS1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.3963	0.0	leaf\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g079360.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY157061	0.0	Lycopersicon esculentum WRKY transcription factor IIe-1 mRNA, partial cds

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001308885.1	1e-178	WRKY transcription factor 37 isoform 2
TrEMBL	M1AI28	1e-154	M1AI28_SOLTU; Uncharacterized protein
STRING	Solyc01g079360.2.1	1e-178	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11281	20	25
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	6e-35	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Solyc01g079360.2.1
Entrez Gene	543856

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Huang S, et al. Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. Mol. Genet. Genomics, 2012. 287(6): p. 495-513 [PMID:22570076]