PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g079560.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 110aa    MW: 12725.4 Da    PI: 4.9005
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g079560.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-12261041699
                         EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  16 lvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         l++p + ++++ +++ +  ++ l+  +g + W+++   r  ++++++ +GWkeF+ +n+++   ++ F +dg ++f  +v++f+k
  Solyc01g079560.2.1  26 LRVPSTLVNRMREETMG--EVLLKCGDGdKYWNITT--REDGNSMYFHGGWKEFALENHIQMTQVLFFNYDGAKTF--TVRIFDK 104
                         67888888777544433..788888777799*****..999999**************************998888..*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.47611105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1611106IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-1613105IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.0E-714105IPR003340B3 DNA binding domain
PfamPF023621.3E-1025105IPR003340B3 DNA binding domain
CDDcd100175.96E-942103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MSNFGGNPND ELSFYKIVLD PRMEELRVPS TLVNRMREET MGEVLLKCGD GDKYWNITTR  60
EDGNSMYFHG GWKEFALENH IQMTQVLFFN YDGAKTFTVR IFDKNGLEK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g079560.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229559.32e-77B3 domain-containing protein Os11g0197600-like
TrEMBLA0A3Q7F0Z85e-76A0A3Q7F0Z8_SOLLC; Uncharacterized protein
STRINGSolyc01g079560.2.18e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37792244
Representative plantOGRP1159047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-13B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]