PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g081100.1.1

Common Name

LOC101251221

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 474aa MW: 53190 Da PI: 5.3063

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g081100.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	269	316	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er+RR ++N+++ Lr+++P++ K++ a+i++ A++YI++L Solyc01g081100.1.1 269 ETKHFATERQRRVHLNDKYKALRSMVPNP-----SKNDRASIVKDAIDYINEL 316 689***********************9.....7*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.59E-15	263	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.396	267	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.64E-12	268	318	No hit	No description
Pfam	PF00010	8.4E-12	269	316	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-13	270	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-10	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0048658	Biological Process	anther wall tapetum development
GO:0052543	Biological Process	callose deposition in cell wall
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MYVEESVCYD PATHHVQHEG LTEDVFVIQE HTYHNNNDSS QQDVAVAAAA AALEIEFQHQ 60 LNLEMEQCYN NNNNNNTHNN NNNIVNEGLS CDQANWGEMN FPPYQNQQHN DNGNSNNNFH 120 QQDFSNPISE TPYLTTPDLL NMFPLPRCTQ SSLLPQKSPN LLTSLGLIGD IDGGGASTSS 180 AICDPSSLLL PLNLPPQPPL LRELFHSFPH GYGLRNLRSN NNTSFFNGLE ETDQGLYQEN 240 GETRPFQNGI FEFSGGMNDI AKNRDGIKET KHFATERQRR VHLNDKYKAL RSMVPNPSKN 300 DRASIVKDAI DYINELKRGV NELKLMAEKK RCNKDRIKRQ KTEGGTTISM DGSDAKQIMD 360 EVEQSYNGNS LRSSWLQRRS KNTEVDVRIV DDEVTVKLVQ QKRINCLFSA SKVLDDLQLD 420 LHHVAGGLIG DYYSFLFNSK ISEGSTVYAS AIAKKLIEVV DIQYAAIAPT NSY*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MYVEESVCYD PATHHVQHEG LTEDVFVIQE HTYHNNNDSS QQDVAVAAAA AALEIEFQHQ  60
LNLEMEQCYN NNNNNNTHNN NNNIVNEGLS CDQANWGEMN FPPYQNQQHN DNGNSNNNFH  120
QQDFSNPISE TPYLTTPDLL NMFPLPRCTQ SSLLPQKSPN LLTSLGLIGD IDGGGASTSS  180
AICDPSSLLL PLNLPPQPPL LRELFHSFPH GYGLRNLRSN NNTSFFNGLE ETDQGLYQEN  240
GETRPFQNGI FEFSGGMNDI AKNRDGIKET KHFATERQRR VHLNDKYKAL RSMVPNPSKN  300
DRASIVKDAI DYINELKRGV NELKLMAEKK RCNKDRIKRQ KTEGGTTISM DGSDAKQIMD  360
EVEQSYNGNS LRSSWLQRRS KNTEVDVRIV DDEVTVKLVQ QKRINCLFSA SKVLDDLQLD  420
LHHVAGGLIG DYYSFLFNSK ISEGSTVYAS AIAKKLIEVV DIQYAAIAPT NSY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g081100.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC225023	0.0	Solanum lycopersicum chromosome 1 clone C01HBa0155M04, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010323236.1	0.0	transcription factor bHLH91-like
TrEMBL	M0ZNJ4	0.0	M0ZNJ4_SOLTU; Uncharacterized protein
STRING	Solyc01g081100.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51
Representative plant	OGRP2659	14	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	7e-72	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc01g081100.1.1
Entrez Gene	101251221

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]