PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g081400.2.1
Common NameLOC101260266
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 168aa    MW: 18428.8 Da    PI: 5.0581
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g081400.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.9e-11571421197
                         HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS
                  B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 
                           s  ++lpkk  +e  +  ++ +   + +   ++W++ +   k++ ++ ++  W++Fv++n+LkegD +vF+l+  + s+ e++v+++
  Solyc01g081400.2.1  57 KPSYSMYLPKKMRSELPSAGARAVP-AVLTCGQKKWDMSYGGVKSGHKFCIE--WRKFVDDNNLKEGDGLVFELVeCSaSKIEFRVQIL 142
                         5556677777776666333223322.3445577*******656666667777..*******************8855567777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-1443142IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-1344142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.27847145IPR003340B3 DNA binding domain
CDDcd100179.81E-1350143No hitNo description
SMARTSM010193.5E-551145IPR003340B3 DNA binding domain
PfamPF023629.7E-955142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MESGSSFGRV SNHSHSYSTM KQPEIESSGI TEIDNGEYWP LSGKPYVDLI LTKTGVKPSY  60
SMYLPKKMRS ELPSAGARAV PAVLTCGQKK WDMSYGGVKS GHKFCIEWRK FVDDNNLKEG  120
DGLVFELVEC SASKIEFRVQ ILSGDFPAEL KPEDEEGANS DNPILLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.239450.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g081400.2.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229533.11e-121B3 domain-containing protein Os06g0112300
RefseqXP_015072506.11e-121B3 domain-containing protein Os06g0112300-like
TrEMBLA0A3Q7EI371e-120A0A3Q7EI37_SOLLC; Uncharacterized protein
STRINGSolyc01g081400.2.11e-121(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Representative plantOGRP7665916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-08B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]