PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g091400.2.1
Common NameLOC101254336
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 168aa    MW: 18207.1 Da    PI: 7.477
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g091400.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.8e-3871071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r +++ +l++eA ar+rdPvyG+vg+i +lqqq  +l
  Solyc01g091400.2.1   7 PCGACKFLRRKCVKGCIFAPYFDSEQgMAHFAVVHKVFGASNTSKLLLTIPPNKRFETVVTLYFEALARVRDPVYGCVGHIISLQQQAVTL 97 
                         7***********************9988*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +aela+++++
  Solyc01g091400.2.1  98 QAELAYVQAR 107
                         ******9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.0846108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MSNGTGPCGA CKFLRRKCVK GCIFAPYFDS EQGMAHFAVV HKVFGASNTS KLLLTIPPNK  60
RFETVVTLYF EALARVRDPV YGCVGHIISL QQQAVTLQAE LAYVQARISM LHHHHHHLPM  120
PPPTPLQADL AAACCSNVSS SVCTSGDPLI DITDLCNVLD QQLDNSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3441017104LOB family transfactor Ramosa2.1
5ly0_B1e-3441017104LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g091400.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229819.11e-122LOB domain-containing protein 19
SwissprotO813223e-53LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A3Q7F4J31e-121A0A3Q7F4J3_SOLLC; Uncharacterized protein
STRINGSolyc01g091400.2.11e-122(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Representative plantOGRP40515100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-54LOB domain-containing protein 31
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]