PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g094490.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 210aa MW: 24578.1 Da PI: 5.2944

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g094490.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.9	4.6e-11	2	99	35	128
NAM 35 kevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....kt 119 ++vd+y ePw++ + ++++ yf ++ +k++++ +r +r + + g+Wk + k+vl++kg+l+g + + + ++++k+ Solyc01g094490.2.1 2 QRVDLYAEkEPWEILE--GSNTNTGYFITPLKKEKSHHTRFKRiVGEGGTWKIQDPAKKVLDEKGRLMGYVHRMKYTPATNKKAIikelFG 90 5678775439**62..2345577**************777799************************55444443222267 PP NAM 120 dWvmheyrl 128 +W+m ey+l Solyc01g094490.2.1 91 EWLMMEYSL 99 9****87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	17.85	1	124	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-12	9	124	IPR003441	NAC domain
Pfam	PF02365	2.5E-4	11	99	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MQRVDLYAEK EPWEILEGSN TNTGYFITPL KKEKSHHTRF KRIVGEGGTW KIQDPAKKVL 60 DEKGRLMGYV HRMKYTPATN KKAIIKELFG EWLMMEYSLY DRYVTNMKKK VVHKDFVICM 120 IKKKKKKKKK QGCDDGKKKD ENIMNEVEVN ELIDSVMEEL EEIDDDNREV DVGDDFLAAL 180 EDDRLNSEEN EISKIDANNI NLDEYDFVI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	129	KKKVVHKDFVICMIKKKKKKKKK
2	121	129	KKKKKKKKK
3	123	129	KKKKKKK
4	123	138	KKKKKKKQGCDDGKKK
5	125	137	KKKKKQGCDDGKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g094490.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019068304.1	1e-150	uncharacterized protein LOC101262060
TrEMBL	M0ZGR1	1e-105	M0ZGR1_SOLTU; Uncharacterized protein
STRING	Solyc01g094490.2.1	1e-151	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1024	13	85
Representative plant	OGRP5881	2	18

Link Out ? help Back to Top
Phytozome	Solyc01g094490.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]