PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g094580.2.1
Common NameLOC101248715
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BES1
Protein Properties Length: 696aa    MW: 77864.5 Da    PI: 5.3318
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g094580.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822140.51.6e-43692131135
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         ggs+r ++ +E+E++k+RER+RRai+aki+aGLR++Gny+l++raD+n+V+ AL+reAGwvv +DGtt++  s+p+ + +a+g+ +++ ++
  Solyc01g094580.2.1  69 GGSRRCRPLEEKERTKLRERQRRAITAKILAGLRRHGNYNLRVRADINDVISALAREAGWVVLPDGTTFPSRSQPQGTGSAGGTPTTMVTS 159
                         6899************************************************************************999999999998888 PP

              DUF822  92 sslq.sslk....s.....salaspvesysaspksssfpspssldsislasaas 135
                         ss++  + +    s     s ++   +++++++ks+ +p +s +ds s+a +++
  Solyc01g094580.2.1 160 SSSHiPTQHippgSlkgvpSGFQNTDDQSACQMKSVLVPTSSPYDSSSTARSQT 213
                         877643221111112122266777778888888899999988888887765543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-3770202IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514458.43E-179252689IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.0E-196255689IPR013781Glycoside hydrolase, catalytic domain
PfamPF013736.0E-106261681IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70292306IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70313331IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70335356IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.5E-9418427IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.7E-70428450IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70501520IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70535551IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70552563IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.7E-70570593IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.5E-9573583IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007502.7E-70610632IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.5E-9661675IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.5E-9676690IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MASEMQRYDT NEDDEEMGMD VKEEDDEDED DEEKNTAMHA IAGFDGVHGS NSSSRFQHHQ  60
QYQEQPTPGG SRRCRPLEEK ERTKLRERQR RAITAKILAG LRRHGNYNLR VRADINDVIS  120
ALAREAGWVV LPDGTTFPSR SQPQGTGSAG GTPTTMVTSS SSHIPTQHIP PGSLKGVPSG  180
FQNTDDQSAC QMKSVLVPTS SPYDSSSTAR SQTSAMVADG LDTQNDPFLV GSADSIDKQV  240
VDIHTKLQER DFAGTPYIPV YVMLPLGVIN MKSELVDADG LVKQLRVLKS INVDGVMVDC  300
WWGIVEANAP QDYNWNGYKL LFQVVREHKL KIKVVMSFHE CGGNIGDDVC IPLPHWVSEV  360
GRSNPDIYFT DRAGRRNPEC LSWGIDKERV LRGRTAVEVY FDYMRSFRVE FDEFFEDGII  420
SMVEVGLGPC GELRYPSNPV KHGWRYPGVG EFQCYDQYLL KNLRKAAEAR GHSFWARGPD  480
NAGSYNSRPQ ETGFFCDGGD YDGYYGRFFL NWYSHVLIDH ADRVLSLAKL AFDGTCIAAK  540
LSGIHWWYKT ASHAAELTAG FYNPSNRDGY VVIAAMLKKH GAALNFKCAE MRMLEEPVDF  600
CDALGDPEGL AWQVLNAAWD VSLPVCSENA LLCHDRGGYN CLLEKAKPLN DPDGKHIFAF  660
TYLRLSPLLM DGQNYMEFER FVKRMHGEAV LEFPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bya_A1e-15125768811444BETA-AMYLASE
1byb_A1e-15125768811444BETA-AMYLASE
1byc_A1e-15125768811444BETA-AMYLASE
1byd_A1e-15125768811444BETA-AMYLASE
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.158140.0fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g094580.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229887.10.0beta-amylase 7 isoform X3
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A3Q7EKY00.0A0A3Q7EKY0_SOLLC; Beta-amylase
STRINGSolyc01g094580.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16072448
Representative plantOGRP4345912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]