PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g095880.1.1

Common Name

LOC104645459

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Protein Properties

Length: 180aa MW: 20749.8 Da PI: 9.6116

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g095880.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.4	2.3e-12	70	161	8	86
-HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 8 sdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 sd+++s +r+ +p ++a++ +++ ++++++++d++g ++k++ +k+ +r v+ +GW++ v+ n+L gD + + + Solyc01g095880.1.1 70 SDTNSSlSRFLIPAECATNLlqhmteserekiQSDDDKGIDISVMDPKGDLHNMKFTEWKSLKRLVFNRGWNKLVENNQLHKGDLLSLWHY 160 555554599****9966699999888877755555999*****999999988************************9988755 PP S CS B3 86 g 86 + Solyc01g095880.1.1 161 R 161 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.2E-17	57	166	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-16	61	163	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	8.839	64	177	IPR003340	B3 DNA binding domain
CDD	cd10017	3.15E-12	65	175	No hit	No description
Pfam	PF02362	1.3E-9	73	159	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MTTIRLFGNN ITVLRLFGVQ FSPLNNNNVQ QRDDRVMNMP DLLPPSLRLN IESVRGSEPV 60 HMGRKYLENS DTNSSLSRFL IPAECATNLL QHMTESEREK IQSDDDKGID ISVMDPKGDL 120 HNMKFTEWKS LKRLVFNRGW NKLVENNQLH KGDLLSLWHY RSFNNKPCFA VNIIPKPKQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g095880.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC240226	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-73o18 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081580.2	1e-118	putative B3 domain-containing protein At5g35780
TrEMBL	A0A3Q7EMI5	1e-129	A0A3Q7EMI5_SOLLC; Uncharacterized protein
STRING	Solyc01g095880.1.1	1e-130	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11679	11	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03170.1	6e-10	B3 family protein

Link Out ? help Back to Top
Phytozome	Solyc01g095880.1.1
Entrez Gene	104645459

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]