PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g096050.2.1
Common NameLOC101254734
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 606aa    MW: 67261.9 Da    PI: 7.2655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g096050.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12434480455
                         HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Solyc01g096050.2.1 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 480
                         799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5548236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-13433484No hitNo description
PfamPF000103.4E-10434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-18434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MVTGNMLWSG EDKAMVASVL GKEAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN  60
AANFSWNYAI FWQISRSKSG ELVLGWGDGC CREPKEAEER EVKKILNLRL DDEGQQRMRK  120
RVLQKLHMLF GGTDEDNYAF GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKYLWLS  180
DALTSNLDYC ARSFLAKSAG MQTIALIPTD VGVVELGSVR SIPESLELLQ NIKSCFSSFL  240
SLVRDKQAAG IAAVPEKNEG NNPRLSNSGA VTERTDGNPK IFGHDLNSGT HFREKLAVRK  300
AEERPWDMYQ NGNRMPFVNA RNGLNPASWA QFSNVKLGKP VELYAPPTPG HNLMNGGREE  360
FRLNNFQHQK PAARMQIDFT GATSRTIVSP AHNVESEHSD VEASCKEDRA GPVDEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ  480
KKLRDMESER ELRLGSTSRD AITSEDSPSS EIQIRGPDIN IEAANDEVIV RVSCSLETHP  540
LSRIIQIFKE AQINVVESKL SAGNGTVYHT FVIKSSGSEQ LTKEKLLAAF SSESNSLRQL  600
SPVGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-29428490264Transcription factor MYC2
5gnj_B5e-29428490264Transcription factor MYC2
5gnj_E5e-29428490264Transcription factor MYC2
5gnj_F5e-29428490264Transcription factor MYC2
5gnj_G5e-29428490264Transcription factor MYC2
5gnj_I5e-29428490264Transcription factor MYC2
5gnj_M5e-29428490264Transcription factor MYC2
5gnj_N5e-29428490264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415423KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.90861e-78flower| fruit
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO43801001e-78
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g096050.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004229991.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLM0ZH360.0M0ZH36_SOLTU; Uncharacterized protein
STRINGSolyc01g096050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  4. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]