PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g096120.2.1

Common Name

LOC101257011

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 277aa MW: 29843.1 Da PI: 9.5591

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g096120.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	33	92	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + a++cprC+s ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+ s Solyc01g096120.2.1 33 DGAINCPRCNSINTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRLS 92 56799****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	26	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.9E-34	35	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.835	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MESTQWSTHE EIGVVKSSMG AEIMNKKVRP VKDGAINCPR CNSINTKFCY YNNYSLTQPR 60 YFCKTCRRYW TEGGTLRNVP VGGGSRKNKR LSSSSSSSQK LPDLNPNPTS HHQNPNNIVI 120 GSNQDLTLGF RTVPQDHHTS FHGVIPQFLE FPKMDGSNNH LGSRTGIASR GFTSFISSAS 180 TPDLNALYNS GFPFQEIKPS AGNADHAASL SNSNYSSGGP GGLENGSGAR IMFPLGGLKQ 240 LSSTNQVDHL TKGQENNNST AGLYWSGMIS GTGGSW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g096120.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC233120	0.0	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-101i8 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004229998.1	0.0	dof zinc finger protein DOF2.5-like
TrEMBL	A0A3Q7ELV1	0.0	A0A3Q7ELV1_SOLLC; Uncharacterized protein
STRING	Solyc01g096120.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	5e-53	Dof family protein

Link Out ? help Back to Top
Phytozome	Solyc01g096120.2.1
Entrez Gene	101257011

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]