PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g096320.2.1
Common NameLOC101262661
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 240aa    MW: 27267.2 Da    PI: 4.9259
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g096320.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-194596556
                        SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++f++eq++ Le++Fe + ++  +++ +LA++lgL+ rqV +WFqN+Ra++k
  Solyc01g096320.2.1 45 RRFSDEQIKSLETMFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 96
                        48*************************************************9 PP
2HD-ZIP_I/II124.54.9e-4044134393
         HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                          rr+s+eq+k+LE++Fe+e+kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L+ke+++L  +l++
  Solyc01g096320.2.1  44 ARRFSDEQIKSLETMFETETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYEALKKEKQSLLIQLQK 134
                         69***********************************************************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-1922100IPR009057Homeodomain-like
PROSITE profilePS5007116.523898IPR001356Homeobox domain
SMARTSM003897.9E-1641102IPR001356Homeobox domain
CDDcd000861.82E-154599No hitNo description
PfamPF000461.9E-164596IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1945105IPR009057Homeodomain-like
PRINTSPR000319.7E-66978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000319.7E-67894IPR000047Helix-turn-helix motif
PfamPF021835.2E-1798138IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MFDTGEFSPS SSTAAVSAEC FSSSSCFSSL SSSKKKKIHS SNNARRFSDE QIKSLETMFE  60
TETKLEPRKK LQLARELGLQ PRQVAIWFQN KRARWKSKQL ERDYSILKSN YDNLASQYEA  120
LKKEKQSLLI QLQKLKEIES DNRCSVIKKN EMEGMPSLSF DLSSQHGTNG VMSDDDIDSS  180
IRADYLGLDD DAEYHLLKIV ETGDSSLTSP ENWGCLDDDG ILNHQPNSSS YDQWWDFWS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.95340.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g096320.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092613e-10Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230017.11e-176homeobox-leucine zipper protein ATHB-12
SwissprotP468976e-65ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A3Q7EMS01e-175A0A3Q7EMS0_SOLLC; Uncharacterized protein
STRINGSolyc01g096320.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.26e-50homeobox 7
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]