PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g096370.2.1

Common Name

LOC101264068

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 451aa MW: 49496.8 Da PI: 5.4496

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g096370.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	4.8e-13	277	323	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr+++P+ +++Ka+ L Av YI++L+ Solyc01g096370.2.1 277 NHVEAERQRREKLNHRFYALRSVVPNV-----SRMDKASLLSDAVSYINQLK 323 799*********************6.....4***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.3E-50	27	212	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	17.218	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.84E-15	276	326	No hit	No description
SuperFamily	SSF47459	1.31E-17	276	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.5E-16	277	332	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-10	277	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.8E-17	279	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MEQLAVSSSP MAVAPPPVDV NQVPLGLQQM LQYVVKSQPE WWAYAIFWQT SNDDEGKNFL 60 AWGDGYFQGD GVVINNKGGG GSSSSLKSQA QSERKKVIKG IQALMDGNGD TDLVDDGDVT 120 DTEWFYVMSL ARSFSAGDGS VTGKAFGSDD FLWITGPDQF QLHYSCERAK EAQIHGIQTL 180 VSIPTSNGVF ELGSTQLIKQ NLSLVQQVKS LFLCCPPIQF LEKTISFADI GLVTGLQQDD 240 NDYKLRENSR KPHPVVAKKR GRKPKGGEED AHMAALNHVE AERQRREKLN HRFYALRSVV 300 PNVSRMDKAS LLSDAVSYIN QLKAKVDELE LQLIDHTKKP KIVTESSSAD NQSATTSSDD 360 QVIKAANPTA APEVEVKIVG TDAMIRVQSE NVDYPSAKLM IALQNLQMQV HHASISSVNH 420 LVLHDVVVRV PQGLSTEDEL RTALLTSYDL *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MEQLAVSSSP MAVAPPPVDV NQVPLGLQQM LQYVVKSQPE WWAYAIFWQT SNDDEGKNFL  60
AWGDGYFQGD GVVINNKGGG GSSSSLKSQA QSERKKVIKG IQALMDGNGD TDLVDDGDVT  120
DTEWFYVMSL ARSFSAGDGS VTGKAFGSDD FLWITGPDQF QLHYSCERAK EAQIHGIQTL  180
VSIPTSNGVF ELGSTQLIKQ NLSLVQQVKS LFLCCPPIQF LEKTISFADI GLVTGLQQDD  240
NDYKLRENSR KPHPVVAKKR GRKPKGGEED AHMAALNHVE AERQRREKLN HRFYALRSVV  300
PNVSRMDKAS LLSDAVSYIN QLKAKVDELE LQLIDHTKKP KIVTESSSAD NQSATTSSDD  360
QVIKAANPTA APEVEVKIVG TDAMIRVQSE NVDYPSAKLM IALQNLQMQV HHASISSVNH  420
LVLHDVVVRV PQGLSTEDEL RTALLTSYDL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-33	27	212	9	192	Transcription factor MYC3
4rqw_B	2e-33	27	212	9	192	Transcription factor MYC3
4rs9_A	2e-33	27	212	9	192	Transcription factor MYC3
4yz6_A	2e-33	27	212	9	192	Transcription factor MYC3
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10893	0.0	leaf\| trichome

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g096370.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244698	2e-07	Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-63e23 map 10, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230022.1	0.0	transcription factor MYC2-like isoform X2
TrEMBL	A0A3Q7EMT2	0.0	A0A3Q7EMT2_SOLLC; Uncharacterized protein
STRING	Solyc01g096370.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1072	21	85
Representative plant	OGRP8004	7	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00870.1	2e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc01g096370.2.1
Entrez Gene	101264068

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]