PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g096790.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 93aa    MW: 10563 Da    PI: 5.1422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g096790.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-116683799
                        EEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 37 tledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                        +++d+ g++W+v +  +k+ ++  ++++kGW++F k + Lk g f++F +d++++ +++vkvf++
  Solyc01g096790.2.1  6 KIKDLCGNVWDVCI--EKSEDGvvTFIGKGWEDFIKYQSLKNGYFLIFIYDDERDSSFTVKVFST 68
                        678999********..8888888899*************************8877778****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.674169IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-10670IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-9668IPR003340B3 DNA binding domain
CDDcd100173.37E-10667No hitNo description
SuperFamilySSF1019361.8E-11774IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MKERSKIKDL CGNVWDVCIE KSEDGVVTFI GKGWEDFIKY QSLKNGYFLI FIYDDERDSS  60
FTVKVFSTNG SKKSVPMTIQ NTKGEDHVIV VE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g096790.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010327438.11e-61B3 domain-containing protein REM20
RefseqXP_025888057.11e-61B3 domain-containing protein REM20
TrEMBLA0A3Q7EM713e-60A0A3Q7EM71_SOLLC; Uncharacterized protein
STRINGSolyc01g096790.2.18e-61(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1600666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-09B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]