PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g097850.1.1
Common NameLOC101256044
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 173aa    MW: 20073.9 Da    PI: 7.3534
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g097850.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF337.7e-1124631049
                        HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        + +fskRr  + KKA+ L   Cd+++ +i+fs++g+ y +
  Solyc01g097850.1.1 24 YASFSKRRLSLYKKASDLVFECDVDIGMIYFSPKGNPYSF 63
                        679********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.969767IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-13766IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-18878IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-9929IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-92944IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-94465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENKKSRGRQ KIPMKKIEKL GDLYASFSKR RLSLYKKASD LVFECDVDIG MIYFSPKGNP  60
YSFFHPNVNT VVSRFQNPDM EFSESDLLIT TDNQVKVKEL KSRLDELDII EDIAIATKKS  120
YDEVIKARKR GWWESIEQLN EPQVTKFEAW MDTIIFNMQN RLNEMENGAS SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g097850.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164373.11e-104PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7EMD61e-124A0A3Q7EMD6_SOLLC; Uncharacterized protein
STRINGSolyc01g097850.1.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-22AGAMOUS-like 62
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]