PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g097890.2.1
Common NameLOC101245401
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 454aa    MW: 48609.9 Da    PI: 6.1255
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g097890.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.79.7e-3590191197
              DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 
                         klfqrlw++eDei lL+G++d+++++g      + + d++afye++k++ +++++k+qlveK+rrLKkK+++ v+k+ sgk+++f+++hdq
  Solyc01g097890.2.1  90 KLFQRLWTDEDEIELLRGFLDYTTQRGLntsspQHHYDTTAFYEQIKSKFQLDFNKNQLVEKLRRLKKKYRTVVSKMGSGKDFVFKSAHDQ 180
                         579************************9776433445****************************************************** PP

              DUF573  87 kifelskkiWg 97 
                          +f++s++iW 
  Solyc01g097890.2.1 181 VTFDISNRIWS 191
                         **********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.7E-3392191IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MDSVPNRHHQ ASYDNLDYEV DMDVEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG  60
KRPRIDDFAI PVILPGAVKK PSAGFDESRK LFQRLWTDED EIELLRGFLD YTTQRGLNTS  120
SPQHHYDTTA FYEQIKSKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ  180
VTFDISNRIW STGGSYARSS PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY  240
HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA  300
VPAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP  360
IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL GFGGGAMSME MMRDEKWRKQ  420
QMLELEVYSK RLELVQDQVK AQLEELRSMG SNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.25090.0cell culture| flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g097890.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230126.10.0probable transcription factor At5g28040
TrEMBLA0A3Q7EMN30.0A0A3Q7EMN3_SOLLC; Uncharacterized protein
STRINGSolyc01g097890.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-45DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]