PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g098050.1.1
Common NameLOC101257514
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 161aa    MW: 18178 Da    PI: 10.4525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g098050.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131358348
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        i  ++ r vtfskRr+g++KKA+    +++ +va i++s+tg+ y+
  Solyc01g098050.1.1 13 IIKETSRMVTFSKRRKGLFKKAKQFESMTGSRVASIVLSPTGRPYT 58
                        556789************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-15362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.979363IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-16463IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-11525IPR002100Transcription factor, MADS-box
PfamPF003193.3E-181258IPR002100Transcription factor, MADS-box
CDDcd001203.89E-131758No hitNo description
PRINTSPR004042.6E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGTGKKKIEI EKIIKETSRM VTFSKRRKGL FKKAKQFESM TGSRVASIVL SPTGRPYTCG  60
DVDYAIRTHF SNSGRCMKLL ITDIMNSHDS NSSSNVVVYG ETSRSKFSSA PKKNSLHNWV  120
KRIDVEQCQN LNWLLMLKQQ LEGTKEKIGE DVESFKAFFV *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g098050.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315464.11e-116agamous-like MADS-box protein AGL28
TrEMBLA0A3Q7EMH01e-115A0A3Q7EMH0_SOLLC; Uncharacterized protein
STRINGSolyc01g098050.1.11e-116(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.11e-09M-type_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]