PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g098060.1.1
Common NameLOC101257814
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17191.5 Da    PI: 9.8466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g098060.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF412.4e-131559549
                        SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         +s r +tfskR++gi+KKAe L  L+  +v  ++fs++g  y+y
  Solyc01g098060.1.1 15 KQSDRLTTFSKRKKGIFKKAELLESLTSSRVTSVVFSPSGIPYTY 59
                        57899***********************************99999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.652363IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-9362IPR002100Transcription factor, MADS-box
CDDcd001209.71E-13460No hitNo description
SuperFamilySSF554551.57E-13568IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-9525IPR002100Transcription factor, MADS-box
PfamPF003195.5E-151459IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-92540IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-94061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGTRKRRTEI EKLTKQSDRL TTFSKRKKGI FKKAELLESL TSSRVTSVVF SPSGIPYTYG  60
NVNSVIKKHF PSCNRSEIST TVMNSHHDVS GESSGSKSLS IPKENGLRRW VEDIDVEGCQ  120
NLNQLFMLKE QLEGTREKII SSDPESFEAL FM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
127TRKRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g098060.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231248.11e-108agamous-like MADS-box protein AGL23
TrEMBLA0A3Q7F7721e-107A0A3Q7F772_SOLLC; Uncharacterized protein
STRINGSolyc01g098060.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.14e-14AGAMOUS-like 23
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]