PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g098070.1.1
Common NameLOC101258418
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17200.8 Da    PI: 10.088
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g098070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391.1e-121259249
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        +i  ++ r v fskRr+g++ KAeEL  +   +v  +++s+ gk y+y
  Solyc01g098070.1.1 12 KITKQTARMVAFSKRRKGLFRKAEELESMSSSRVTSVVISPFGKPYTY 59
                        68999******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.063363IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-12362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-16472IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-11525IPR002100Transcription factor, MADS-box
PfamPF003193.4E-161259IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-112540IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-114061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MGTGKKKIEI EKITKQTARM VAFSKRRKGL FRKAEELESM SSSRVTSVVI SPFGKPYTYG  60
NVNSVIKKYF SICIRPEIST PVMNSHPSSS NVSGESLGSK SSSTPNGNAL CNWVEGIDVE  120
ECQNLNQLLM LKKQLEGTRE KIVSKESESF QALFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g098070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231250.11e-109agamous-like MADS-box protein AGL61
TrEMBLA0A3Q7EMH51e-108A0A3Q7EMH5_SOLLC; Uncharacterized protein
STRINGSolyc01g098070.1.11e-109(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72350.11e-11M-type_MADS family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]