PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g100220.2.1
Common NameLOC101266764
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 150aa    MW: 16112.9 Da    PI: 10.6253
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g100220.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.61.1e-202155135
                GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        Cs C+ttkTplWR+gp+g+k+LCnaCG++yrkk++
  Solyc01g100220.2.1 21 CSDCKTTKTPLWRSGPSGPKSLCNACGIKYRKKKS 55
                        ********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-141555No hitNo description
SMARTSM004011.1E-161566IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.021551IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-171955IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.43E-152071No hitNo description
PfamPF003201.3E-182154IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MDPNQKDESS GSEATGISKS CSDCKTTKTP LWRSGPSGPK SLCNACGIKY RKKKSSPIGL  60
TKGATKKKEK PLSNSGSTEE VEYCKKGKMG NGKKDGKLSK VLRVKLMMLG KEVVILQRQR  120
SAMKKPRKLD EVERAAVLLM ALSCGSVFG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.65090.0flower| fruit| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g100220.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385030.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-10f3 map 1, complete sequence
GenBankAC2389200.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-222e21 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230282.11e-102GATA transcription factor 16
TrEMBLA0A3Q7F8I61e-101A0A3Q7F8I6_SOLLC; Uncharacterized protein
STRINGSolyc01g100220.2.11e-102(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.15e-24GATA transcription factor 16
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]