PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g103830.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 211aa MW: 24492.3 Da PI: 10.1825

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g103830.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	72	9.4e-23	11	64	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y eC++N Aa+ g+++DGCgEf+p+ g+ t +++ CaAC CHRnFHR+ ++ Solyc01g103830.1.1 11 VKYLECRHNYAARSNGYVLDGCGEFCPT-GALETLESFICAACHCHRNFHRKVEV 64 79***********************9.6668*****************865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-12	11	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.0E-20	11	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.1E-20	12	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.319	13	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	2.9E-6	134	197	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MASNNKKYFL VKYLECRHNY AARSNGYVLD GCGEFCPTGA LETLESFICA ACHCHRNFHR 60 KVEVELEDGV ESPIISINHP SRGTPLVIID DPPLQYTVKS RAQFCETSKK NNIDVETKMK 120 RDIGEIKVRK LKRKYNASSS KRMRLNPYQR ERIWIFANEI MRWKWTKSNE QVIPFCDEIG 180 IAPKFLKNWI NNTKSRTRPL AKNGHVRNKK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g103830.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015054791.1	1e-149	zinc-finger homeodomain protein 4-like
TrEMBL	A0A3Q7EQA5	1e-136	A0A3Q7EQA5_SOLLC; Uncharacterized protein
STRING	Solyc01g103830.1.1	1e-157	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10889	11	18
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	4e-26	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Solyc01g103830.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]