PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g103840.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

ZF-HD

Protein Properties

Length: 85aa MW: 9529.72 Da PI: 6.772

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g103840.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	54.7	2.4e-17	11	64	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 v+Y eC++N Aa+ g+++DG gEf+p+ g+ t + + CaA CH nFH++ ++ Solyc01g103840.1.1 11 VKYLECRHNYAARSNGYVLDGYGEFCPT-GAPETLEFFICAAWHCHQNFHKKVEV 64 79***********************9.66679***************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-8	11	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.8E-17	11	63	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-15	12	61	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	16.576	13	62	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 85 aa Download sequence Send to blast
MASNNNKHFL VKYLECRHNY AARSNGYVLD GYGEFCPTGA PETLEFFICA AWHCHQNFHK 60 KVEVEVENKV ESPVISINPS HGTC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g103840.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015088823.1	1e-43	zinc-finger homeodomain protein 4-like
TrEMBL	A0A3Q7ERK8	1e-56	A0A3Q7ERK8_SOLLC; Uncharacterized protein
STRING	Solyc01g103840.1.1	2e-57	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA26486	2	2
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	4e-12	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Solyc01g103840.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]