PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc01g104650.2.1

Common Name

LOC101258010

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 298aa MW: 32080.1 Da PI: 8.2417

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc01g104650.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.3	7.9e-14	216	270	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+eN +L e ee +ke k Solyc01g104650.2.1 216 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEENARLLREEEEKNKERLK 270 589**************************************99888777776554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.1E-13	211	275	No hit	No description
SMART	SM00338	9.4E-10	213	277	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.116	215	267	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-12	216	268	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.81E-10	217	268	No hit	No description
CDD	cd14707	3.97E-22	217	257	No hit	No description
PROSITE pattern	PS00036	0	220	235	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MASKVMPSAS TTPNSDRSLH PQNPSSSLNH SHPSRNFDSM NMDEILKNIY SDSDPFACSV 60 SATAAVHTPS ATAAGVGDVG PTKTVDEVWR EIVAGGGGGG GSREPEMTLE DFLTKAGAVT 120 EEDVRVPVIA PPPPPPPPPA TGAPSARGFV VDNMMGTGNC QFPVAMQNGP GGYGMEPQPH 180 MGFGNGVVAI TGSGSGSGRG KRRSTVEELP ADRATQQKQR RMIKNRESAA RSRERKQAYT 240 VELESLVTQL EEENARLLRE EEEKNKERLK QIMENLIPVV EKRRPPRVLR RVRSMSW*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.6634	0.0	flower\| fruit\| leaf\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc01g104650.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232622	1e-07	Solanum lycopersicum chromosome 7 clone C07HBa0025K11, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004230593.1	0.0	bZIP transcription factor 12 isoform X1
TrEMBL	A0A3Q7EQU8	0.0	A0A3Q7EQU8_SOLLC; Uncharacterized protein
STRING	Solyc01g104650.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2771	24	52
Representative plant	OGRP8662	7	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	8e-20	G-box binding factor 4

Link Out ? help Back to Top
Phytozome	Solyc01g104650.2.1
Entrez Gene	101258010

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]