PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g107410.2.1
Common NameLOC101247266
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-PHD
Protein Properties Length: 797aa    MW: 87482 Da    PI: 5.5594
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g107410.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.79.3e-14559611355
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         kR t+ +  +++L e F+ n+yp+++++e+L k+lgLt  qV+ WF N R  +
  Solyc01g107410.2.1 559 KRKTYGEVSTKRLYESFKDNQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 611
                         79999999*****************************************9755 PP
2PHD38.13.4e-13213268151
                         SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                 PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                         +C+ Cg+    ++++++lCdg C++ fH+ C++++l +e++p +   wlC+ C++k
  Solyc01g107410.2.1 213 FCAKCGSmdLPADNDIILCDGaCERGFHQLCVEPPLLKEDIPPDdeGWLCPGCDCK 268
                         699****87677********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-13204271IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.3E-12210268IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.932211268IPR019787Zinc finger, PHD-finger
SMARTSM002493.4E-9213266IPR001965Zinc finger, PHD-type
CDDcd155043.83E-27213265No hitNo description
PfamPF006289.9E-11213268IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590214265IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.9E-14550608IPR009057Homeodomain-like
PROSITE profilePS5007114.042554614IPR001356Homeobox domain
SuperFamilySSF466895.13E-13555615IPR009057Homeodomain-like
SMARTSM003891.1E-11556618IPR001356Homeobox domain
CDDcd000868.66E-12559608No hitNo description
PfamPF000463.5E-11559612IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MSTLGNTSVS PEKARTAGGG HHTASAGNMS ENLGADQSRE SCENTVQNLN QSEYREKSPG  60
QPRKRKSISG SPISSTRLLR SKSKEKSGAS EAKNTVVTHD ATEEKKRKRR KKKHSKHIAA  120
NEFTRIRGHL RYLLQRIKYE QTLIEAYSGE GWKGQSLEKI KLEKELQRAK THIFRYKLKI  180
RDLFQRLDTL LAEGRLPASL FDNEGEIDSE DIFCAKCGSM DLPADNDIIL CDGACERGFH  240
QLCVEPPLLK EDIPPDDEGW LCPGCDCKVD CIDLLNDLQG TDLSVTDSWE KVYPKEAAAA  300
ASGEKLDDIS GLPSDDSEDD DYNPEAPDVG KNDSEDESSS DESESDFYSA SEDLAEAPTK  360
DDEILGLSSE DSEDDDYNPD DPDKDEPVKT ESSSSDFTSD SEDFSLIVDT NRLRGDEQGV  420
SSSVDNSMPN SVSLKEKAKV GKAKGNSLKD ELSYLMQSDS PLVSAKRHIE RLDYKKLHDE  480
TYGNGSSDSS DEDYDDGPLP KVRKLRNAKG AMAAPSSTPA DIKYQSGKQK GSGHASDSGI  540
SEKLKVGGTG TSESPSSGKR KTYGEVSTKR LYESFKDNQY PDRDAKEKLG KELGLTAHQV  600
SKWFENARHC HRHSPNWKKI MSHKVSEESP SKSQIIGEPL GTESNSIIAS CNGVEKLEQP  660
KQCLNGEKGH AIDKSEEELL IQDTSGKKSS EPTKKVHTTN EGSEDTPRSK TSKKQKAKVG  720
TANDNTTEQA SGGTPCSKTY KKQKAKVGTA NSQNDNTTDQ GPDDTPQSKT RKKPMVKVDT  780
PNSQNVRRSS RLQKQG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKRKRR
2104111KKRKRRKK
3104112KKRKRRKKK
4105110KRKRRK
5106112RKRRKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.177490.0flower| fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g107410.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308700.10.0PHD-finger family homeodomain protein
SwissprotP487861e-124PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q7FCH30.0A0A3Q7FCH3_SOLLC; Uncharacterized protein
STRINGSolyc01g107410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.19e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]