PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g108950.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 348aa    MW: 40702.2 Da    PI: 4.6951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g108950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.74.4e-13590193
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                        ffk++  +  ++ +r+ +p  ++ ++ +gk   ++++ l++  s+ sW v++   k  +  ++ +GW++F ++n+L+ g +++F +dg++ f 
  Solyc01g108950.1.1  5 FFKAF--NPQTSAKRMKIPTAYT-NYkNGK--LPRKVFLRNqFSNMSWPVRV--IKIEKDLYFLNGWEKFIEDNNLEFGNIIIFDYDGNEIF- 89
                        78888..56666678*******9.663555..7889*****6677*******..67777767777**********************98877. PP

                        .E CS
                  B3 92 lv 93
                          
  Solyc01g108950.1.1 90 -D 90
                        .4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-16399IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.929397IPR003340B3 DNA binding domain
SuperFamilySSF1019361.39E-17599IPR015300DNA-binding pseudobarrel domain
CDDcd100175.67E-10587No hitNo description
PfamPF023621.1E-10589IPR003340B3 DNA binding domain
SMARTSM010199.4E-11597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.2E-15236330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-17236331IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.529240339IPR003340B3 DNA binding domain
CDDcd100172.74E-7241333No hitNo description
SMARTSM010190.0033243334IPR003340B3 DNA binding domain
PfamPF023622.1E-7251326IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEKGFFKAFN PQTSAKRMKI PTAYTNYKNG KLPRKVFLRN QFSNMSWPVR VIKIEKDLYF  60
LNGWEKFIED NNLEFGNIII FDYDGNEIFD IKLLEPNGCI KNGAKCDNKK EEVNVEHQQS  120
IEPKEKNKTR DNNNSSFDDD STDNYMVEEE DNDEEEVENE EEEDNEQKGE EKETEEEVDE  180
GEEDETEEEV VERKENETDG EDTSASKAGR RKAITCKVRN VHDKYGADIF RSGRATQPKN  240
PYFVAKMRAK MRNQLYVPID VVRDYKLELP PTMIIRDSVG REFETKVNKW SNGTTWLVGG  300
WRNLCRWNLV EKDDRCICEF VRGKCGRVLY LQIQVLYEGS NSHRNNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g108950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2384990.0Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-8l19 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884759.10.0B3 domain-containing protein Os12g0591400-like
TrEMBLA0A3Q7EY671e-137A0A3Q7EY67_SOLLC; Uncharacterized protein
STRINGSolyc01g108950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Representative plantOGRP8585614
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.14e-14B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]