PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc01g110370.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 242aa    MW: 26876.5 Da    PI: 5.173
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc01g110370.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-07433534
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                         C+ +e+  ++lfC  ++  lC++C ++ H
  Solyc01g110370.2.1  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                        7**************************998 PP
2zf-B_box25.43e-085291237
            zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                        + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Solyc01g110370.2.1 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                        5689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003365.0E-9147IPR000315B-box-type zinc finger
PfamPF006435.7E-6334IPR000315B-box-type zinc finger
CDDcd000213.87E-7345No hitNo description
SMARTSM003363.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2145196IPR000315B-box-type zinc finger
PfamPF006435.7E-65285IPR000315B-box-type zinc finger
CDDcd000217.14E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0000989Molecular Functiontranscription factor activity, transcription factor binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SKIQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEFPGDKLGP SNEQGLPSTE  120
QGDVRRETAQ PFKLPMIDNH QPNRETAMTA VENNVNNSVK VENELIDLNS RPQRMHGQTS  180
NNQEQVMDML GGSNHESVGV VPDGPFKREP EKCELLPFQI SNLNYELELP APAEFYAMSK  240
L*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.195950.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc01g110370.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396501e-136Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230952.11e-158B-box zinc finger protein 19
RefseqXP_010315332.11e-158B-box zinc finger protein 19
SwissprotC0SVM52e-81BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3Q7EU211e-156A0A3Q7EU21_SOLLC; Uncharacterized protein
STRINGSolyc01g110370.2.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Representative plantOGRP33521628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-80DBB family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]