PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g014750.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 158aa MW: 18185 Da PI: 8.4767

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g014750.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.8	2.6e-17	70	133	2	65
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKf 65 lf+++w +eDei+lL+G+i+fk++t + ++ +++f+ f+ s+ ++ ++ ql eKirrLKk Solyc02g014750.1.1 70 LFSKVWCDEDEISLLKGIIKFKEQTACEITQCMTEFCAFILPSLTLQPTRVQLREKIRRLKKSM 133 699**********************************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.3E-14	71	134	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MTENSTTGAA NCSVEFVREE EEVVSNKRKN DDIDVTRFLY NDTPSDGYYQ EKTPSPKPKR 60 MMNLKSKPPL FSKVWCDEDE ISLLKGIIKF KEQTACEITQ CMTEFCAFIL PSLTLQPTRV 120 QLREKIRRLK KSMKRLLPQE IRLIQTCTNS NCSSYVT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	LKKSMKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g014750.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025884855.1	3e-89	probable transcription factor At4g00610, partial
TrEMBL	A0A3Q7EVH1	1e-112	A0A3Q7EVH1_SOLLC; Uncharacterized protein
STRING	Solyc02g014750.1.1	1e-112	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13805	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	2e-10	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Solyc02g014750.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]