PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g030460.2.1

Common Name

LOC101256819

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 339aa MW: 38512.6 Da PI: 9.5455

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g030460.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.2	9e-18	16	103	2	72
trihelix 2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 Wt qe+++Liea++ ++er +++ + +W++v ++++++g+ rs++qC++kw+nl +++kk++e e++ + Solyc02g030460.2.1 16 WTIQETMVLIEAKKMDDERRMKRQggdignssssergninkPGELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDFKKVREYERRVS 103 ***********96666655543345555566666666558899************************************99864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.632	8	89	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.6E-4	12	90	IPR009057	Homeodomain-like
Pfam	PF13837	6.3E-12	15	101	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDSSSSMLRD YRKGNWTIQE TMVLIEAKKM DDERRMKRQG GDIGNSSSSE RGNINKPGEL 60 RWKWVEDYCW RHGCLRSQNQ CNDKWDNLMR DFKKVREYER RVSEKLLLAQ GNDDENVIKS 120 YWKIERIERK EKNLPTNMLP EIYEALVQVV DKRGQKMLVG SSFNPTTTSM SPTLQQLQIA 180 TFPLPLPPPP QLLPPRPPLV QPPPPNIPPT QPLPTMCDSS DHDKSEHSDS PAKRRRKGKG 240 GEASGTSGDH HNINNLQEVG SAIFRSATII AKTIKASEEG EDRRHNEMLK LHERRLQIEE 300 SKAEINRQGI NGLVDSINRL ANSILSLASN NNQPPPPK*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.24033	3e-50	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g030460.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010315652.1	0.0	trihelix transcription factor ASR3-like
TrEMBL	K4B595	0.0	K4B595_SOLLC; Uncharacterized protein
STRING	Solyc02g030460.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36
Representative plant	OGRP1881	16	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-54	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Solyc02g030460.2.1
Entrez Gene	101256819

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]