PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g032070.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 109aa    MW: 11958.1 Da    PI: 4.0335
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g032070.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.48e-167683499
                        SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         t +l  +sg++W v l   +++++ ++ +GW +Fvk++ L++gD++vF++d +  f   v+vf++
  Solyc02g032070.1.1  7 GTTVLVGPSGNVWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDADLHF--IVQVFDE 68
                        478899***********..99999**************************9886666..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.676169IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-19574IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-13668IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-17671IPR015300DNA-binding pseudobarrel domain
CDDcd100176.83E-16667No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MEGGDSGTTV LVGPSGNVWP VDLIQQDDGL FFNNGWVSFV KDHCLETGDS LVFRYDADLH  60
FIVQVFDESS CDKEASYNTD CSQEATDLYN LALKKRDRGN SVLGNEKT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.227571e-156callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO58913971e-156
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g032070.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-152S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019069240.12e-63B3 domain-containing protein Os01g0723500-like
RefseqXP_027772493.11e-63B3 domain-containing protein Os01g0723500-like isoform X2
TrEMBLA0A3Q7FHN53e-74A0A3Q7FHN5_SOLLC; Uncharacterized protein
STRINGSolyc02g032070.1.15e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.18e-10B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]