PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g055370.2.1
Common NameLOC101246296
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 123aa    MW: 14573.5 Da    PI: 4.7154
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g055370.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.93.6e-131489590
                        -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                  B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90
                              +k+g l +p  f+ ++     + +  +  + +++ ++W vk+  ++++   + ++ W eFv++ +Lk+gD++vFk++g++ef
  Solyc02g055370.2.1 14 I--LPGFKNG-LKIPLGFL-KYlkR--HDQ-HEHAILTTDDKKWLVKV--NGRR---LEEGSWIEFVEELNLKVGDVLVFKHEGDMEF 89
                        5..4566666.*******9.77332..333.366777889********..7777...67899*******************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.3E-18397IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-18397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771797IPR003340B3 DNA binding domain
CDDcd100175.30E-11895No hitNo description
SMARTSM010191.3E-121097IPR003340B3 DNA binding domain
PfamPF023621.3E-91889IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MEIPPKKPHF FKPILPGFKN GLKIPLGFLK YLKRHDQHEH AILTTDDKKW LVKVNGRRLE  60
EGSWIEFVEE LNLKVGDVLV FKHEGDMEFD VFKFDLSHHC DKEYAMYQEE DEDEDEEDED  120
KL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g055370.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2468121e-170Solanum lycopersicum strain Heinz 1706 chromosome 2 clone sle-35o15 map 2, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231728.12e-83B3 domain-containing protein REM5-like
TrEMBLA0A3Q7FIV94e-82A0A3Q7FIV9_SOLLC; Uncharacterized protein
STRINGSolyc02g055370.2.17e-83(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Representative plantOGRP2682231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.16e-15B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]