PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g061780.2.1

Common Name

LOC101257530

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 245aa MW: 28226 Da PI: 7.6566

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g061780.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.3	1.6e-45	9	135	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+++yLk+ ++++k++ ++i ++iy ++Pw+Lp +++ +e+ewyfF++ ++k+ + r+nr+t++g+Wkatg+d+++ Solyc02g061780.2.1 9 PGFRFHPTEEELINFYLKRIINDDKIDS-NTIGFLNIYLYDPWELPGMARIGEREWYFFVPINRKHGPKGRPNRTTRNGFWKATGSDRQIR 98 9************************9.88***********8888999********************************** PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ ++++glkktLvfy grapkg++tdWvm+eyrl Solyc02g061780.2.1 99 SSiePKRVIGLKKTLVFYGGRAPKGTRTDWVMNEYRL 135 99888889*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.203	7	152	IPR003441	NAC domain
SuperFamily	SSF101941	1.01E-53	8	152	IPR003441	NAC domain
Pfam	PF02365	4.7E-25	9	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MSLAELELPG FRFHPTEEEL INFYLKRIIN DDKIDSNTIG FLNIYLYDPW ELPGMARIGE 60 REWYFFVPIN RKHGPKGRPN RTTRNGFWKA TGSDRQIRSS IEPKRVIGLK KTLVFYGGRA 120 PKGTRTDWVM NEYRLPHGHK DHDIVLCKVY RKATSFKVLE ERAMIEEDEA KKTYLASAPH 180 DESQDMLASL NSSSSKNDMY FKSCEEKNDE LLGSNAFVEP SKFSIDSLSS PLWSTGQDLW 240 TLFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-42	3	155	15	171	NAC domain-containing protein 19
3swm_B	1e-42	3	155	15	171	NAC domain-containing protein 19
3swm_C	1e-42	3	155	15	171	NAC domain-containing protein 19
3swm_D	1e-42	3	155	15	171	NAC domain-containing protein 19
3swp_A	1e-42	3	155	15	171	NAC domain-containing protein 19
3swp_B	1e-42	3	155	15	171	NAC domain-containing protein 19
3swp_C	1e-42	3	155	15	171	NAC domain-containing protein 19
3swp_D	1e-42	3	155	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g061780.2.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010317253.1	0.0	NAC domain-containing protein 22-like
Swissprot	Q10S65	9e-81	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A3Q7F060	0.0	A0A3Q7F060_SOLLC; Uncharacterized protein
STRING	Solyc02g061780.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3531	22	48
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	2e-80	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Solyc02g061780.2.1
Entrez Gene	101257530

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]