PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g061870.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 220aa    MW: 25210.6 Da    PI: 7.0733
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g061870.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM41.54.2e-13611410128
                 NAM  10 tdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgkdkevlskkg 97 
                         +de+l+  yL + v+g ++ + + i+ v++y   +P++L  +  +++++ yfF++ +k+   gk  nr  a + g W++ g+++ev++k++
  Solyc02g061870.1.1   6 NDEQLI-GYLINFVTGVPVGC-NEIRIVELYGNkKPSQLFDT--TTTDHHYFFTELKKR---GKYFNRgiAGRGGSWRKYGTNEEVVDKNR 89 
                         699999.9**********999.6699999886549****633..234577999888764...6677776466799**************** PP

                 NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                         +++g k+ + f   +    e+  W+m+ey l
  Solyc02g061870.1.1  90 SVIGFKRRFRFE--E----ENHIWIMKEYCL 114
                         ***********7..2....3458******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100514.2671141IPR003441NAC domain
PfamPF023657.4E-86114IPR003441NAC domain
SuperFamilySSF1019414.84E-157141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGTNINDEQL IGYLINFVTG VPVGCNEIRI VELYGNKKPS QLFDTTTTDH HYFFTELKKR  60
GKYFNRGIAG RGGSWRKYGT NEEVVDKNRS VIGFKRRFRF EEENHIWIMK EYCLFDSKLK  120
DLRLRGQIRH EGFVVCSIMR KGTCSSQCQV NQDLGLIQCD DLKESTMTAA KDDECSVRQE  180
VVHTRPLLDS MDGNIPGQVG LGSNEHQETP YSVTFYEFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g061870.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467430.0Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233985.11e-124NAC domain-containing protein 96-like
TrEMBLA0A3Q7EYE91e-163A0A3Q7EYE9_SOLLC; Uncharacterized protein
STRINGSolyc02g061870.1.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]