PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062090.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 183aa    MW: 20709.4 Da    PI: 4.6336
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062090.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM23.31.8e-077841188
                 NAM 11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknr..atksgyWkatgk 88
                        dee + +yL k v+g  +e+ + i+ vd+y   +P++L ++  +++++ + F++ +kk+ +gk+ nr  +   g Wk   +
  Solyc02g062090.1.1  7 DEEQLLRYLLKFVTGMLVEC-DQIRFVDLYGKeKPSQLFET--TTTDRHHVFTQLKKKKGNGKNFNRgiVGGGGSWKGIDN 84
                        777778***********999.88******97648****633..23457899****************73344889*97655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6785IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGMMNFDEEQ LLRYLLKFVT GMLVECDQIR FVDLYGKEKP SQLFETTTTD RHHVFTQLKK  60
KKGNGKNFNR GIVGGGGSWK GIDNDLGQIS AAANVIPNGN ITQVSLVTEE SKLRQGSVHQ  120
ETPPDYDIAT YYKQLDAHAV SVLETMVPYI PEPLQEDEVD SIPLFSEDFY IGYIDLWLKN  180
WQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062090.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2467431e-154Solanum lycopersicum strain Heinz 1706 chromosome 2 clone hba-11o22 map 2, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064738.19e-39uncharacterized protein LOC107009957
TrEMBLK4B6991e-133K4B699_SOLLC; Uncharacterized protein
STRINGSolyc02g062090.1.11e-134(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]