PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g062210.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 214aa    MW: 24421.9 Da    PI: 5.6286
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g062210.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM26.71.6e-084311451128
                 NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +++++ y F+  +kk++ gk  +ra++ g+Wk+ g+ +++ +++g+++g+ k   + +       +  W+m+ey+l
  Solyc02g062210.1.1  43 LGTNKTDHYVFTLLQKKKEDGKYFSRAIAGGVWKEYGTAESLEDSEGSQIGIMKKYRLVE------DNYVWTMKEYSL 114
                         34566789*******************************************999988872......3468******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.0251142IPR003441NAC domain
SuperFamilySSF1019411.09E-1116142IPR003441NAC domain
PfamPF023652.1E-418114IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAANYTNKQL MEFLIKSFTF VPYEEQVFGL ADLYGKEKVS QILGTNKTDH YVFTLLQKKK  60
EDGKYFSRAI AGGVWKEYGT AESLEDSEGS QIGIMKKYRL VEDNYVWTMK EYSLTESKRN  120
ELKQKYQHTA HDEFVMCHIR MKANFPVSSS SQCQENQDSA LVPSDDMKES QLPAVIEEEC  180
SVSVSQKKNA LVHQETPSAK EEEHSVSGVH QGXX
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g062210.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7FJC61e-153A0A3Q7FJC6_SOLLC; Uncharacterized protein
STRINGSolyc02g062210.1.11e-158(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2075933
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]