PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g065290.1.1

Common Name

LOC101260606

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 204aa MW: 21890.4 Da PI: 8.9516

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g065290.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.2	8.5e-39	26	86	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCds ntkfCyynny+lsqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+s Solyc02g065290.1.1 26 PDHHLPCPRCDSINTKFCYYNNYNLSQPRHFCKSCRRYWTQGGTLRDIPIGGGSRKNAKRS 86 67899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-25	22	84	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.2E-34	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.04	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MTLESSEKLV TKQQTGGVQA PPTQEPDHHL PCPRCDSINT KFCYYNNYNL SQPRHFCKSC 60 RRYWTQGGTL RDIPIGGGSR KNAKRSRIYT NTPFSSTIAS VSSHAVPGNS PFMLPLPAAN 120 QLLFGTDVKP INNFTSLLSS HGPGVLALGG IEDMGFGIGR GNVWPFTGAP DSYSRNYNNG 180 GGAGMWQFSG GEGGFVGSGD YFN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g065290.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215367	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0044L14, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233942.1	1e-150	dof zinc finger protein DOF3.4-like
TrEMBL	A0A3Q7F0C4	1e-149	A0A3Q7F0C4_SOLLC; Uncharacterized protein
STRING	Solyc02g065290.1.1	1e-149	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	4e-39	Dof family protein

Link Out ? help Back to Top
Phytozome	Solyc02g065290.1.1
Entrez Gene	101260606

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]