PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g067380.2.1
Common NameLOC101266898
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 95aa    MW: 10554.9 Da    PI: 9.3337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g067380.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.1e-0725611854
                        HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        +  ++L++llP+ + + +s K s + +L+++++YI++L
  Solyc02g067380.2.1 25 QLVSKLQQLLPEiR-NRRSNKASASKVLQETCNYIRNL 61
                        55689*******76.899999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.734761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-72376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.8E-82580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSGRRSRTQS SEGGTSRISD DQIIQLVSKL QQLLPEIRNR RSNKASASKV LQETCNYIRN  60
LHKEVDDLSD RLSQLLSTID ADSPEAAIIR SLIM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Function -- GeneRIF ? help Back to Top
  1. These results suggest that SlPRE2 affects plant morphology and is a negative regulator of fruit pigment accumulation.[SlPRE2]
    [PMID: 28724949]
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g067380.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233358.16e-61transcription factor PRE6 isoform X2
RefseqXP_015065156.16e-61transcription factor PRE6
SwissprotQ9LJX16e-40PRE5_ARATH; Transcription factor PRE5
TrEMBLM1A9E18e-57M1A9E1_SOLTU; Uncharacterized protein
STRINGSolyc02g067380.2.12e-60(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Representative plantOGRP18771240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-33bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Zhu Z, et al.
    Overexpression of SlPRE2, an atypical bHLH transcription factor, affects plant morphology and fruit pigment accumulation in tomato.
    Sci Rep, 2017. 7(1): p. 5786
    [PMID:28724949]