PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g069860.2.1

Common Name

LOC101260988

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YA

Protein Properties

Length: 209aa MW: 23062.6 Da PI: 7.8374

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g069860.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.6	8.9e-33	113	169	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQy++Il+RRq+Rak+e+ekkl k+rkpylheSRh hAl+R+Rg+gGrF Solyc02g069860.2.1 113 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 169 79**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.1E-36	111	172	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.561	112	172	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.2E-27	114	169	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.2E-23	115	137	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	117	137	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.2E-23	146	169	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTSSLHYHSD GSENEQSENQ SEAHSESSSP AAGMSVPGTV TTNMHYVMPN QLGNGNPMAQ 60 TAYPYPDPYY RSIFAPYDPQ PYPPQPYPAQ PMVHIQLMGI QQAGVPLPSD AIDEPVFVNA 120 KQYHGILRRR QSRAKAESEK KLLKARKPYL HESRHLHALK RARGCGGRFL TAKETDNQQK 180 QDETGDKSQV NINLESGKDK VASSENAS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	5e-23	112	182	1	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.25591	0.0	flower\| fruit\| root\| trichome

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g069860.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013370	0.0	Lycopersicon esculentum clone 135390R, mRNA sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233167.2	1e-155	nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	3e-67	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1S3ZJW1	1e-136	A0A1S3ZJW1_TOBAC; nuclear transcription factor Y subunit A-7 isoform X4
STRING	Solyc02g069860.2.1	1e-154	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33
Representative plant	OGRP680	16	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	8e-52	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Solyc02g069860.2.1
Entrez Gene	101260988

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]