PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g070140.1.1
Common NameLOC101263670
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 196aa    MW: 23354.4 Da    PI: 9.6336
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g070140.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.51.1e-091213211128
                 NAM  11 deelvveyLkkkvegkkleleevikev.diykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                         d++++++ + +k   +k+++   ++++ +i  + P+++ +++++ ++k++ + ++++k+++  + +  + ++g+Wk +gk  ++++ +++l
  Solyc02g070140.1.1  12 DKNMMDYVIDNKPFPHKHTI-MKVDDIyGIRMFTPSQIFQSTEEpKNKNVRYLITNQKNERARSSA-YKDSRGVWKFSGKIDSIFDPNKRL 100
                         55555554555544444444.2244544677889****7554442444444444444433333333.34568**************98888 PP

                 NAM 100 ...vglkktLvfykgrapkgektdWvmheyrl 128
                            v + + + +y +++++  k++W m ey +
  Solyc02g070140.1.1 101 lgyVKISRWFYYYGEKNKRIIKSEWHMREYYV 132
                         455556667888888999999*********75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.92155IPR003441NAC domain
SuperFamilySSF1019412.88E-927147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDKINEYWKS TDKNMMDYVI DNKPFPHKHT IMKVDDIYGI RMFTPSQIFQ STEEPKNKNV  60
RYLITNQKNE RARSSAYKDS RGVWKFSGKI DSIFDPNKRL LGYVKISRWF YYYGEKNKRI  120
IKSEWHMREY YVTPTINSRC NVDKKGVIFV MMFKNQKRND NDNNIDQDDE TPGQLDDHQD  180
FVANQITQSL QGIHL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g070140.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153610.0Solanum lycopersicum chromosome 2 clone C02HBa0026M05, complete sequence
GenBankAC2154820.0Solanum lycopersicum chromosome 2 clone C02SLm0064E19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010317351.11e-144uncharacterized protein LOC101263670
TrEMBLA0A3Q7F2921e-143A0A3Q7F292_SOLLC; Uncharacterized protein
STRINGSolyc02g070140.1.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2681322
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]