PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g070880.1.1
Common NameLOC101265299
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 247aa    MW: 27928.1 Da    PI: 5.2082
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g070880.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.41.8e-06186230454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + n  Er+RR ++++    L+ ++P a      +++ +++L +Av+Y+ksL
  Solyc02g070880.1.1 186 TSNCSERKRR-KLKKMVKALKGIVPGA-----SRMNTVTVLDEAVRYLKSL 230
                         679999*998.7**************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.988181230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-9184239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-9186240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-4186230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7188236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-7191235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MQNNYQFSPQ IQKPFVSLED QAAGGNIFDI PVPSVFDTMA LPTSFKSSVP FHGFEFRSSE  60
ACPKNFIIFD QTDYRSQIMY HPAMTSKFPY PDLNYNSTCF HDCMERKIAN NENTEVSSYL  120
KEDSDDINAL LSLEEEECEE YDEEEVSTAR TDANYGCSSP ESYSNYHCQS KKSRTSSFRE  180
SSGSSTSNCS ERKRRKLKKM VKALKGIVPG ASRMNTVTVL DEAVRYLKSL KVEVQKLGVD  240
NLKTYA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.115460.0flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g070880.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153810.0Solanum lycopersicum chromosome 2 clone C02HBa0091J18, complete sequence
GenBankAC2153890.0Solanum lycopersicum chromosome 2 clone C02HBa0122F06, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233098.10.0transcription factor bHLH144
TrEMBLA0A3Q7F2670.0A0A3Q7F267_SOLLC; Uncharacterized protein
STRINGSolyc02g070880.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA81241924
Representative plantOGRP596855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.28e-30bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]