PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g076810.2.1

Common Name

LOC101252652

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Trihelix

Protein Properties

Length: 282aa MW: 32453.8 Da PI: 5.8306

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g076810.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.2	3.4e-16	24	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++q + +L++a ++ +l+rg+l++++W++vs+ + ++r+ +r+ +qCk++++ l+k+yk +k+ ++ + + +s++p+f++l+ Solyc02g076810.2.1 24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQRVSDSVnalhgHSRKTHRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFERLD 114 7********************************************************************999998888899****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.0E-24	22	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQRVSDS 60 VNALHGHSRK THRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDMLIENS 120 DKKVTPVMVS LLPLPMSSPP MGVPLPYRRS AVVTPVSLPQ KRQLPAFDES CFRRNYSAVA 180 AAAAAGGGEE DYDDEEEDVE MTEESWEEDG MRRLAKAIES FGEIYERVEG MKQRQMVELE 240 KQRMQFAKDL EVQRMQLFMD TQVQLEKIKH TKLSGSNDLY S*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.8014	0.0	callus\| flower\| fruit\| leaf\| seed\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g076810.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233061.1	0.0	trihelix transcription factor ASIL2 isoform X2
TrEMBL	M1AN53	1e-155	M1AN53_SOLTU; Uncharacterized protein
STRING	Solyc02g076810.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-32	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Solyc02g076810.2.1
Entrez Gene	101252652

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]