PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g076920.2.1

Common Name

LOC101252043

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 241aa MW: 26638.4 Da PI: 8.8885

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g076920.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.6e-13	53	99	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr l+P++ K++Ka+ L ++v+ +k+L Solyc02g076920.2.1 53 KSHSEAERRRRQRINAHLSTLRNLVPSS-----DKMDKAALLAEVVRQVKQL 99 58***********************8.....7***********99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.447	50	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.87E-11	53	101	No hit	No description
Pfam	PF00010	1.7E-10	53	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.01E-13	53	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-13	54	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.6E-4	138	181	No hit	No description
CDD	cd04873	4.48E-6	138	183	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MNCRNLGEFC ENEAKGVVQS LVLDSEKGEL VKASGRVEKK IGKSEGKTIA ALKSHSEAER 60 RRRQRINAHL STLRNLVPSS DKMDKAALLA EVVRQVKQLK ETATHDSERF FIPLDSDEIK 120 VEIIAENAID GTCLFRASVC CEYRTHLLSD LKQTINSLHV NLVKSEISTL GSRVKNVFLF 180 TNSIHGGGGC ATIQARDIFL SSVRQAFSSV LDKVSAFPEY SAYPNKRQRV SCFDSSSLLF 240 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g076920.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215388	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0122E16, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232970.1	1e-176	transcription factor bHLH30-like
TrEMBL	A0A3Q7FPX7	1e-175	A0A3Q7FPX7_SOLLC; Uncharacterized protein
STRING	Solyc02g076920.2.1	1e-176	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6730	22	30
Representative plant	OGRP377	15	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Solyc02g076920.2.1
Entrez Gene	101252043

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]