PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g077250.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 355aa    MW: 40345.5 Da    PI: 5.2792
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g077250.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.58.6e-33115215194
                 TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 
                         a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s   ++++ + s ++++s+  
  Solyc02g077250.2.1 115 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPQKMQYSFDQEQSPef 205
                         589***********************************************************99944444333455555555554444433 PP

                 TCP  89 ....kaaksa 94 
                             +  +++
  Solyc02g077250.2.1 206 sqenRGVPNS 215
                         3332222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.4E-31116210IPR005333Transcription factor, TCP
PROSITE profilePS5136930.013118176IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSEECTKCTS VIFIYFFPLG PRCMKMNHQF QVSDEEDGSE EEEEEEEEVF QENDIGNLQS  60
HYQNQQMPQS LCKKPEKWAN FTVSEQELNK GTRRMKPKRA KTDVIEGHGG RIIRATGRKD  120
RHSKVSTAKG PKDRRVRLSP NTAIQFYDVQ DRLGYDRPSK AIDWLIKEAK AAIDALGEFP  180
NNFHSTKLNP QKMQYSFDQE QSPEFSQENR GVPNSECGVQ DNQQEVNYDI PNLFSSSDGF  240
KIPFLSDLQS HPHGHFLNFQ SLQDDTVLSS GNHHQGRFFT TTSVNHFPSV LSQNQVFSHR  300
EPLQSSFFPL MSDPLSTQLE TLSYGFSNDG FSGIISSASR IQGEEEQATF FTAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-20123176154Putative transcription factor PCF6
5zkt_B4e-20123176154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298RRMKPKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g077250.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963200.0Solanum lycopersicum TCP transcription factor 1 (TCP1) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233783.10.0TCP transcription factor 1
TrEMBLK4B8V20.0K4B8V2_SOLLC; Uncharacterized protein
STRINGSolyc02g077250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-36TCP domain protein 10
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]