PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g077380.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 410aa MW: 46310.7 Da PI: 7.7245

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g077380.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	86.2	4.4e-27	61	156	1	94
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++r+kC ++ Cv+ ++fpa+++ +f vhk+FG snv+k +k+ ++ +++ ++s ++eA+ +++dPv+G +g ++kl++ql++ Solyc02g077380.1.1 61 ACASCKHQRKKCMSGdCVMWRHFPASKMDEFLGVHKVFGISNVTKKIKSFDDVAqQDESIKSFLWEAKLWQEDPVHGPLGEYKKLEKQLMK 151 7*********8855******************************6654399******************************99 PP DUF260 90 lkael 94 ++ + Solyc02g077380.1.1 152 EQRNK 156 88754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.945	60	163	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-28	61	156	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MINATIAIML FSQEILYKNI LLLCCFVDGP MPNNNDDNNN NNSYSNSGED ELQEVGSNRP 60 ACASCKHQRK KCMSGDCVMW RHFPASKMDE FLGVHKVFGI SNVTKKIKSF DDVAQQDESI 120 KSFLWEAKLW QEDPVHGPLG EYKKLEKQLM KEQRNKQLQI VQFPRVPQVP ITTTSESTTS 180 YVPHLAIDQH HRENGANHSQ QDYNMLNSSV PNYANHFQWH GPQGVETQGI TSNGSNLMNI 240 GFGNDMFGYG NLPYRPIEQI RNGYIPMVHR QATYNNGGHV QLHEQRFPYN NVDLGLERRR 300 KDQTDQFVHP NFNGRHVRGR GIGSIGPMIR HSPIISNCSS GSSVDSIIVN ATGTMANHSV 360 NGRHVEDGRN QRAQGVATVL QDFTNYNHND LPGEHKQRDM VNRDHSTSK*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MINATIAIML FSQEILYKNI LLLCCFVDGP MPNNNDDNNN NNSYSNSGED ELQEVGSNRP  60
ACASCKHQRK KCMSGDCVMW RHFPASKMDE FLGVHKVFGI SNVTKKIKSF DDVAQQDESI  120
KSFLWEAKLW QEDPVHGPLG EYKKLEKQLM KEQRNKQLQI VQFPRVPQVP ITTTSESTTS  180
YVPHLAIDQH HRENGANHSQ QDYNMLNSSV PNYANHFQWH GPQGVETQGI TSNGSNLMNI  240
GFGNDMFGYG NLPYRPIEQI RNGYIPMVHR QATYNNGGHV QLHEQRFPYN NVDLGLERRR  300
KDQTDQFVHP NFNGRHVRGR GIGSIGPMIR HSPIISNCSS GSSVDSIIVN ATGTMANHSV  360
NGRHVEDGRN QRAQGVATVL QDFTNYNHND LPGEHKQRDM VNRDHSTSK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-15	56	154	7	102	LOB family transfactor Ramosa2.1
5ly0_B	5e-15	56	154	7	102	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g077380.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC246576	4e-08	Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-28l13 map 1, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025885544.1	0.0	uncharacterized protein LOC112940987
TrEMBL	A0A3Q7F3I5	0.0	A0A3Q7F3I5_SOLLC; Uncharacterized protein
STRING	Solyc02g077380.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14094	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	4e-21	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Solyc02g077380.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]