PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g077390.1.1
Common NameS
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WOX
Protein Properties Length: 359aa    MW: 40145.5 Da    PI: 7.5684
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g077390.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.81.6e-1749109257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         ++R+++ +eq+++Le+ F++   +p ++e++++ +kl    ++ +++V++WFqNr+ + k+
  Solyc02g077390.1.1  49 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 109
                         89*****************99*************************************995 PP
2Wus_type_Homeobox111.93.5e-3648111265
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq
  Solyc02g077390.1.1  48 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 111
                         689***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1241115IPR009057Homeodomain-like
PROSITE profilePS5007110.38245110IPR001356Homeobox domain
SMARTSM003894.9E-947114IPR001356Homeobox domain
CDDcd000865.33E-848111No hitNo description
Gene3DG3DSA:1.10.10.601.5E-648115IPR009057Homeodomain-like
PfamPF000463.9E-1549109IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0030010Biological Processestablishment of cell polarity
GO:0048825Biological Processcotyledon development
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0009081anatomyinflorescence branch
PO:0007037developmental stageinflorescence bifurcation stage
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MASSNRHWPS MFKSKPCNSH HHQWQHDINS SIIQQRPPCN PEERSPEPKP RWNPRPEQIR  60
ILEAIFNSGM VNPPRDEIRK IRAKLQEYGQ VGDANVFYWF QNRKSRSKHK QRHLQAKAQQ  120
QHHNNNNNSS HQPIITSSSS SSDKSSPNSL TFSIGTSNVM DLLNSPTSSV NQQNYNEFLS  180
NEQPFFFTVQ PPPVVPTHDH SAGFCFQDSS TFTPHSSSSG LLLNEWMGGI STQAPNNSKK  240
DENDKINLQS QLMSYTVTST VSPLATTTIP TISHIQGVTV DPNDAGPTRS TVFINDVAFE  300
VGIGPFNVRE VFGEDAVLIH SSGEPLITNE WGITIQPLQH GAFYYLLRTS SIASTHHI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g077390.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1906630.0Solanum lycopersicum cultivar M82 COMPOUND INFLORESCENCE (S) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234072.10.0compound inflorescence
RefseqXP_010315847.10.0compound inflorescence isoform X1
TrEMBLB6E0Y50.0B6E0Y5_SOLLC; COMPOUND INFLORESCENCE
STRINGSolyc02g077390.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59422335
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.19e-55homeobox-3
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Lippman ZB, et al.
    The making of a compound inflorescence in tomato and related nightshades.
    PLoS Biol., 2008. 6(11): p. e288
    [PMID:19018664]