PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g079760.2.1
Common NameLOC101268539
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 441aa    MW: 48776.8 Da    PI: 6.232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g079760.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.81.2e-053363731254
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Solyc02g079760.2.1 336 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 373
                         677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5334377No hitNo description
SuperFamilySSF474591.83E-11334386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-9338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MADEYQASVC GGNWWNSSRS IFGSSLCASS VPLGNSNFAW TNDHLLDMKS SCRSNDESGN  60
SDESVVLQEL PKHDSTLQIL GSGLNSSSTN DNWSHTLMHG NDRSESSYPS ILQQEDINSS  120
MNYQQESGVD CSSNSFKQDF TLGMNHPITS STNTHHDQIS STFPMNSSFS NYPSALLQTL  180
FDNDPPQQQQ LQQSLFATNN NQPMNFPTSS LNYRPDLNDF SPSMPKFPNS LLIPKQTTTP  240
SNHFPNYSLN ATASLYNTSS ATSLNNMRAT LMPSMHPQIL QSPTFNDNSR APNVTPKSKV  300
EDLRESRVSK KSVTNEATLK RARIETPSPL PTFKVRKEKL GDRITALQQL VSPFGKTDTA  360
SVLHEAIEYI KFLHDQVNAL STPYLKNGST TTQHQQIADK VKEEDLRSRG LCLVPISSTF  420
PVATESSTDF WTPNFGGTFR *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.83430.0callus| flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g079760.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2469562e-13Solanum lycopersicum chromosome 3 clone MboI0020O17, complete sequence
GenBankAC2470192e-13Solanum lycopersicum chromosome 3 clone MboI0020O17, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232764.10.0transcription factor bHLH112
TrEMBLA0A3Q7FRQ90.0A0A3Q7FRQ9_SOLLC; Uncharacterized protein
STRINGSolyc02g079760.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Representative plantOGRP31351129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-57bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]