PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g079810.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 210aa    MW: 23722.1 Da    PI: 4.9463
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g079810.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-103985455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        ++ ++Er+RR+++ +++ +Lr+l+P+      + ++K +i + A+ YI++Lq
  Solyc02g079810.1.1 39 KNLKAERNRRQKLSERLLQLRSLVPNI-----TNMTKETIITDAITYIRELQ 85
                        56689*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.67E-93485No hitNo description
SuperFamilySSF474591.2E-1435101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.4433584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-1338100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-83985IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-94190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048656Biological Processanther wall tapetum formation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEFPSTPFDN SNNSEEREVG RRTDKRKQID GEVKEYKSKN LKAERNRRQK LSERLLQLRS  60
LVPNITNMTK ETIITDAITY IRELQMNVDN LSEQLLEMEA TQGEELETKN EEIIDTADEM  120
GKWGIEPEVQ VANIGPTKLW IKIVCQKKRG GLTKLMEAMN ALGFDINDTS ATASKGAILI  180
TSSVEVVRGG LTEANRIREI LLEIIHGIY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026RRTDKRK
22027RRTDKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g079810.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885203.11e-151transcription factor DYT1
TrEMBLA0A1U8FSD11e-124A0A1U8FSD1_CAPAN; transcription factor DYT1-like
STRINGSolyc02g079810.1.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Representative plantOGRP1030948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-48bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]