PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g080680.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 230aa MW: 25774.2 Da PI: 9.1953

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g080680.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34.4	5e-11	2	25	32	55
G2-like 32 ilelmkvkgLtlehvkSHLQkYRl 55 +l++m+vkg+t++h+kSHLQ+YR+ Solyc02g080680.1.1 2 VLQIMNVKGVTISHIKSHLQMYRS 25 89*********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.4E-10	2	26	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVLQIMNVKG VTISHIKSHL QMYRSLKHQE MQAEAANGRK RNRIDGADSM NNPRANLVHC 60 YNHINGKAAV VDGSDQMNFP QGNLVNGYNH IKGKATMFDG SDQMNFPQGN LVHCYNHNNG 120 KAPIFNGSNQ MNFPQGNLVH CYNHNNGKAP IFNGSNQMNF PQENLVHRYN HNNGKSVFDG 180 HLNPTVTTNY LEKIASSSTV FPPPWMEMMI IKSCEHMVLA VCQIRVQLQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g080680.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215407	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0167J21, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027770015.1	1e-101	two-component response regulator ORR24-like
TrEMBL	A0A3Q7F5U9	1e-147	A0A3Q7F5U9_SOLLC; Uncharacterized protein
STRING	Solyc02g080680.1.1	1e-170	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA26863	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42660.1	5e-09	G2-like family protein

Link Out ? help Back to Top
Phytozome	Solyc02g080680.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]