PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g082110.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 182aa    MW: 20954.5 Da    PI: 6.6976
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g082110.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.31.1e-124368126
                        --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                        y   +C+++ +tG+C yGd+CkF+H+
  Solyc02g082110.2.1 43 YQPDICKDYKETGYCGYGDSCKFMHD 68
                        67789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.72E-104073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8784270IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-74269IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-104368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-134373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.8E-14104162IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139205.8E-9120162No hitNo description
SuperFamilySSF578504.08E-14120163No hitNo description
SMARTSM001841.2E-4121158IPR001841Zinc finger, RING-type
CDDcd001628.09E-7121162No hitNo description
PROSITE profilePS5008910.571121159IPR001841Zinc finger, RING-type
PROSITE patternPS005180136145IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNQYTDYKAG LRREHTISSE KAGGAHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG  60
DSCKFMHDRG DYKSGWQMER EWDEAEKERK RKLALGMLNE DDEDAEKSDE DDDDDALPFA  120
CFICREPFVD PVMTKCKHYF CEHCALKHHA KNKKCYVCNQ PTLGIFNTAF EIRKRMAAQG  180
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M1e-5427176181317RING finger protein 113A
5z58_M1e-5427176181317RING finger protein 113A
6ff4_t1e-5427176181317RING finger protein 113A
6ff7_t1e-5427176181317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.66110.0floral bud| flower| fruit| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc02g082110.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265100.0Solanum lycopersicum chromosome 2 clone C02HBa0172H10, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066007.11e-137zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770877.11e-137zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770878.11e-137zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770879.11e-137zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770880.11e-137zinc finger CCCH domain-containing protein 1 isoform X2
RefseqXP_027770881.11e-137zinc finger CCCH domain-containing protein 1 isoform X2
SwissprotQ8GX841e-101C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0V0IA821e-134A0A0V0IA82_SOLCH; Putative zinc finger CCCH domain-containing protein 1-like
TrEMBLM1B2E51e-134M1B2E5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000355221e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44032337
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-102C3H family protein