PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g082380.1.1

Common Name

LOC104645780

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

MYB_related

Protein Properties

Length: 223aa MW: 25013.6 Da PI: 10.2078

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g082380.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.9	2e-12	58	102	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ l++ + +++G g+Wk+I+r+ +t+ q+ s+ qky Solyc02g082380.1.1 58 PWTEGEHSLFLMGLNKFGRGDWKSISRHYVVSKTPTQVASHAQKY 102 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.446	51	107	IPR017930	Myb domain
SuperFamily	SSF46689	3.43E-15	53	107	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-7	55	105	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	1.0E-16	56	105	IPR006447	Myb domain, plants
CDD	cd00167	8.34E-9	58	103	No hit	No description
Pfam	PF00249	7.2E-10	58	102	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-8	58	102	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MEEMKNLYIN LFKEAEMENP SINTNVVDNS SDKEANPNDT PPPPVQITHS RPHRRGIPWT 60 EGEHSLFLMG LNKFGRGDWK SISRHYVVSK TPTQVASHAQ KYFCRRNSKT PVDRRRPSIN 120 DIQTVTVNST RTTTTTASNN NDQVGSLSRP FRYANYTFGG PTFANNSNGN FGIYHPGEAS 180 GSNSFIMKQN NNNNNNDLHR PVSPRPFHSM YLSSTKGNNP QV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g082380.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215452	0.0	Solanum lycopersicum chromosome 2 clone C02SLe0033D19, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316490.1	1e-164	transcription factor MYB1R1-like
TrEMBL	K4BAA9	1e-142	K4BAA9_SOLLC; Uncharacterized protein
STRING	Solyc02g082380.1.1	1e-164	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5234	20	32
Representative plant	OGRP12301	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	1e-29	MYB family protein

Link Out ? help Back to Top
Phytozome	Solyc02g082380.1.1
Entrez Gene	104645780

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]