PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g084200.1.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C3H

Protein Properties

Length: 595aa MW: 65503.6 Da PI: 9.4766

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g084200.1.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.6e-06	553	574	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ff + C+ G++C+F H+ Solyc02g084200.1.1 553 RCVFFNKPRGCRNGSSCPFLHD 574 7********************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	12.934	548	576	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 595 aa Download sequence Send to blast
MVSWASGPNL CQVKHYQEED FPSKVSRGSQ HLLQLLQGRL SYNFLAKWKC PPKFNLNEKW 60 RVVAGEESKE AGDQEHREKT VLEVVFPSQS AIPPNPCTSS DLDQNYDDIR TPAIRIIPIE 120 EEADVQVPSR TISSKSPDAC LLNSSSTSVS IVTSQKLPAN EKSLPQSLST LQNPRKPSNN 180 SPLSAKWPSN VQSTLPYLSR CRNLKGSEQN KISPKPPVVP QFQPTFKNIS TQDQTEIYPD 240 QRANQSYGPK DQRICEKQNI PQHKFEVSGM PPAKHNPVTQ HILGSEGDLT VVIATAVAAL 300 AKSQEHDNLI DTNLLVGLLL NPKEIPKLVN ERGLATNAKT SAATIDSLVA VMSRPVDLPV 360 PLPRTKPDQV IIKPINEYQA PHAGPGPILG PRPMAKSVPL TMTKPETSVN SNLVNEQRPP 420 PHVGTANIRE SKSLAHSTSD LNLEKIKKLI NKYGTPDNVG GKPWVKSELV PSSCSKYDVV 480 LPNVGHSYPF SSMTSPTPLH KDINYCKSLI KQHGEICESA VDERLQNTNP RGNYTRVPGL 540 LMNKKQIQCS STRCVFFNKP RGCRNGSSCP FLHDISGQKR SGGILEARDL KRMS*

Sequence ? help Back to Top

Protein Sequence Length: 595 aa Download sequence Send to blast

MVSWASGPNL CQVKHYQEED FPSKVSRGSQ HLLQLLQGRL SYNFLAKWKC PPKFNLNEKW  60
RVVAGEESKE AGDQEHREKT VLEVVFPSQS AIPPNPCTSS DLDQNYDDIR TPAIRIIPIE  120
EEADVQVPSR TISSKSPDAC LLNSSSTSVS IVTSQKLPAN EKSLPQSLST LQNPRKPSNN  180
SPLSAKWPSN VQSTLPYLSR CRNLKGSEQN KISPKPPVVP QFQPTFKNIS TQDQTEIYPD  240
QRANQSYGPK DQRICEKQNI PQHKFEVSGM PPAKHNPVTQ HILGSEGDLT VVIATAVAAL  300
AKSQEHDNLI DTNLLVGLLL NPKEIPKLVN ERGLATNAKT SAATIDSLVA VMSRPVDLPV  360
PLPRTKPDQV IIKPINEYQA PHAGPGPILG PRPMAKSVPL TMTKPETSVN SNLVNEQRPP  420
PHVGTANIRE SKSLAHSTSD LNLEKIKKLI NKYGTPDNVG GKPWVKSELV PSSCSKYDVV  480
LPNVGHSYPF SSMTSPTPLH KDINYCKSLI KQHGEICESA VDERLQNTNP RGNYTRVPGL  540
LMNKKQIQCS STRCVFFNKP RGCRNGSSCP FLHDISGQKR SGGILEARDL KRMS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g084200.1.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226503	0.0	Solanum lycopersicum chromosome 2 clone C02HBa0044J01, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316414.1	0.0	zinc finger CCCH domain-containing protein 68
TrEMBL	A0A3Q7F931	0.0	A0A3Q7F931_SOLLC; Uncharacterized protein
STRING	Solyc02g084200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13292	4	4
Representative plant	OGRP2129	6	8

Link Out ? help Back to Top
Phytozome	Solyc02g084200.1.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]