PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc02g084520.2.1

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C3H

Protein Properties

Length: 911aa MW: 98063 Da PI: 6.0939

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc02g084520.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.4	3.8e-06	887	910	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+ f+++G Ck G+ C + H+ Solyc02g084520.2.1 887 GQRICK-FYESGRCKKGAACDYLHP 910 6899.8899***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55277	1.27E-14	159	221	IPR003169	GYF domain
PROSITE profile	PS50829	13.867	169	222	IPR003169	GYF domain
CDD	cd00072	8.39E-14	169	225	No hit	No description
SMART	SM00444	5.7E-8	170	224	IPR003169	GYF domain
Gene3D	G3DSA:3.30.1490.40	6.5E-14	171	222	IPR003169	GYF domain
Pfam	PF02213	1.4E-9	172	213	IPR003169	GYF domain
PROSITE profile	PS50103	15.075	885	910	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-6	885	909	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 911 aa Download sequence Send to blast
MGGSLEAEIF RLNNLRDRNI DHEHEGFLNT STLRECVEKL ELLKTPEERH RRLLEIPEVH 60 ADPKMNPEYE SGGDDGEHNK KIKVEHPAPR CTRVSRRKLI SSGSLVKEEG SIMAQRRMSG 120 KRDACGTNIS DKQGNQLTVE QAVDRSGSET SIASLLMANT SSVISIETDK LWHYRDPAKR 180 IQGPFSVMQL RKWNTSGLFP PDMRIWTNHE HEDSVLLTNA LKGFFHKESQ VHDKTLSQSQ 240 EPASLDNRTS VRWSESAGSG GECEKREAPG HHHNPNYCSN GNTKFTRMKG LSPSFPRCVE 300 SLKGNNSCSD KPQWLSSSSS SQREVILALP RQGKGHGTDK SRSVADYGTQ NSRKSTLCHA 360 QSNRQNLDPS SGQNQKSFTS NKCSINLDSG STFASAIKSS DLLFEQKGEM NLPDLPSPTP 420 ETSYGDLEAQ AAEKLLLLSS VIPVCGSDVH DLPSPTPISN SEAQGAHAAE NKESGPSDLP 480 DSEARGGHAG ENKESGLSSL PIQESGQRWS SASSPVVGGP QLHEIADEWG RSSPAAKPST 540 EEWDSTLVSV SSLKSVDTVS DRVATPSSIA NLLTAKPSIE EWDSGLVSVS SLKPAEAVGD 600 HVVTPASNAD QLNHTSSSHP MSNFFDEPIE FSTLAEESVS DLLAEVDAME SQNQNGMGSP 660 TSGMRCGEEM IPGCKTDCFS PIEEPSHTHD PVRSDDLSST GDLLLPCQSS VMDETVGASR 720 ADAFDPLRRS GGNSSTSSEG ETKSVDVLFS QGDVRCGIPA PCTTGIPASC TTSQTSAFSA 780 IGRSTVFEGM MNGRGAAPGK PSQGYANVGY GSNMGGAWGN SHMNRGAPFS GNNPVWDSHR 840 RYAGERSGGP RDWALQGGES GFGRGRPSWN RQQPYGGGGY SRPPPKGQRI CKFYESGRCK 900 KGAACDYLHP *

Sequence ? help Back to Top

Protein Sequence Length: 911 aa Download sequence Send to blast

MGGSLEAEIF RLNNLRDRNI DHEHEGFLNT STLRECVEKL ELLKTPEERH RRLLEIPEVH  60
ADPKMNPEYE SGGDDGEHNK KIKVEHPAPR CTRVSRRKLI SSGSLVKEEG SIMAQRRMSG  120
KRDACGTNIS DKQGNQLTVE QAVDRSGSET SIASLLMANT SSVISIETDK LWHYRDPAKR  180
IQGPFSVMQL RKWNTSGLFP PDMRIWTNHE HEDSVLLTNA LKGFFHKESQ VHDKTLSQSQ  240
EPASLDNRTS VRWSESAGSG GECEKREAPG HHHNPNYCSN GNTKFTRMKG LSPSFPRCVE  300
SLKGNNSCSD KPQWLSSSSS SQREVILALP RQGKGHGTDK SRSVADYGTQ NSRKSTLCHA  360
QSNRQNLDPS SGQNQKSFTS NKCSINLDSG STFASAIKSS DLLFEQKGEM NLPDLPSPTP  420
ETSYGDLEAQ AAEKLLLLSS VIPVCGSDVH DLPSPTPISN SEAQGAHAAE NKESGPSDLP  480
DSEARGGHAG ENKESGLSSL PIQESGQRWS SASSPVVGGP QLHEIADEWG RSSPAAKPST  540
EEWDSTLVSV SSLKSVDTVS DRVATPSSIA NLLTAKPSIE EWDSGLVSVS SLKPAEAVGD  600
HVVTPASNAD QLNHTSSSHP MSNFFDEPIE FSTLAEESVS DLLAEVDAME SQNQNGMGSP  660
TSGMRCGEEM IPGCKTDCFS PIEEPSHTHD PVRSDDLSST GDLLLPCQSS VMDETVGASR  720
ADAFDPLRRS GGNSSTSSEG ETKSVDVLFS QGDVRCGIPA PCTTGIPASC TTSQTSAFSA  780
IGRSTVFEGM MNGRGAAPGK PSQGYANVGY GSNMGGAWGN SHMNRGAPFS GNNPVWDSHR  840
RYAGERSGGP RDWALQGGES GFGRGRPSWN RQQPYGGGGY SRPPPKGQRI CKFYESGRCK  900
KGAACDYLHP *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc02g084520.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010316400.1	0.0	zinc finger CCCH domain-containing protein 44-like
TrEMBL	A0A3Q7F728	0.0	A0A3Q7F728_SOLLC; Uncharacterized protein
STRING	Solyc02g084520.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2181	15	16
Representative plant	OGRP15528	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51120.1	1e-30	DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding

Link Out ? help Back to Top
Phytozome	Solyc02g084520.2.1

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505]